EEL human visual cortex 445 genes RNA spatial data
收藏DataCite Commons2022-09-22 更新2024-07-29 收录
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https://figshare.com/articles/dataset/EEL_human_visual_cortex_445_genes_RNA_data/20324865/2
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<strong>Raw RNA locations of a visual cortex human brain section produced by EEL FISH for 445 genes.</strong> <br> RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) <br> <strong>RNA .parquet files</strong> Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. <br> "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. <br> <strong>Gene colors .pkl file</strong> Pickled Python dictionary with gene colors used in the paper.
提供机构:
figshare
创建时间:
2022-09-20



