Prediction of SNP variant consequence with reference to the annotated barley genome.

SNP Variant Consequence Prediction based on the T. monococcum SNPs identified by aligning the sequenced reads from DV92 and G3116 to the reference barley genome and the barley gene models (v1.0) available from Ensembl Plants database. Listed variant effect types are based on the categories adopted by the Ensembl Plants database.