List of assemblies and sequence reads evaluated.

The “map_SCHU_S4_percent” column indicates for each dataset the percentage of the SCHU_S4 genome (assembly accession GCA_000008985) which does not contribute to the SNP search. This percentage corresponds to regions deleted in the strain being mapped, and also to repeated sequences. The “remarks” column provides a list of duplicate entries (usually strains for which both assemblies and raw data have been deposited, and also reference strains which have been independently sequenced). Entries labelled as “redundant” are entries showing an identical wgSNP profile with an other entry. The last four columns indicate which public datasets were used for the making of the indicated figures. (XLSX)