Expression data from CTCF RNAi experiments in LNCaP cell line

This study aimed to ascertain the effect of CTCF RNAi on gene expression, chromatin conformation and the chromatin environment in prostate cancer cell line, LNCaP We measured changes to gene expression following 24hrs, 72hrs and 144hrs of CTCF RNAi. The following comparisons were made for each of the time points. Untransfected to Non-target control RNAi, Untransfected to CTCF RNAi, Non-target control RNAi to CTCF RNAi. Genes were deemed significantly up- or down-regulated if the Benjamini-Hochberg adjusted P-value was < 0.05. Experiments were performed in duplicate.