Slidescans: p161

This repository constains all the slidescans associated with slide block p161 for the project:

"A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids"

https://www.biorxiv.org/content/10.1101/2020.07.24.219659v1

Each acquisition follows the naming scheme:

"{operator}_{date}_{slideblock}_{slidenr}{suffix}"

e.g. v.zanotelli_20190509_p161_025.czi

Each acquisition has 3 files:

- suffix='.czi': main slidescan

- suffix='_pt1.czi': slide label scan

- suffix='_pt2.csi': coarse slide overview scan

Each 'main slidescan' is usually composed of multiple 'Scenes', corresponding to regions scanned with high resolution. The convention is that each scene corresponds to unique cut that is independently stained and processed. Note that scene numbering does not necessarily follows a logical order.

The slidescans were acquired using an AxioScan A1