Data of GWAS associated SNPs in regulatory regions

Data file 1: DNase I hotspot samples included in FORGE analysis.
A list of DNase I hotspot samples included in FORGE analysis is shown.The table lists details of the 125 ENCODE and 299 Roadmap Epigenome samples. The fields are File: file name; Lab: data-generating lab. One of UW (University of Washington, John Stamatoyannopoulos lab), Duke:UNC:UTA (Duke University, Greg Crawford lab) or combined representing a merged dataset from both labs; Experiment type: always DNase-seq in the current implementation; Project: Either ENCODE or Roadmap; Cell: cell type; Tissue: tissue name derived as described above; Data type: always hotspots in the current implementation; Short name: a short sample used for plotting; Individual: either the code for the individual sample as described in Biosamples or NA if not available; GEO accession: the GEO accession where found, or “Not found” if it could not be deconvoluted.
Data file 2: List of phenotypes analysed.
The list of phenotypes analysed, with non-redundant SNP counts and Pubmed identifiers for the studies involved is shown. This table is also available in the data directory of the GitHub release,https://github.com/iandunham/Forge.

数据文件 1：包含在 FORGE 分析中的 DNase I 热点样本。
展示包含在 FORGE 分析中的 DNase I 热点样本列表。该表格列出了 125 个 ENCODE 和 299 个 Roadmap 基因组学样本的详细信息。字段包括：文件：文件名；实验室：生成数据的研究室。包括华盛顿大学（University of Washington，John Stamatoyannopoulos 实验室）、杜克大学（Duke University，Greg Crawford 实验室）或两者合并的实验数据集；实验类型：在当前实施中始终为 DNase-seq；项目：ENCODE 或 Roadmap 之一；细胞：细胞类型；组织：根据上述描述推导的组织名称；数据类型：在当前实施中始终为热点；简称：用于绘图的小样本名称；个体：Biosamples 中描述的个体样本代码，或 NA 如果不可用；GEO 访问号：找到的 GEO 访问号，或“未找到”如果无法反卷积。
数据文件 2：分析表型列表。
展示分析了的表型列表，包括涉及研究的非冗余单核苷酸多态性（SNP）计数和 PubMed 标识符。此表格亦可在 GitHub 发布的数据目录中找到，链接为 https://github.com/iandunham/Forge。