Datasets and scripts used in 'Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria'

<br> This directory contains data sets and scripts used in "host range of SE: a new class of mobile DNA elements nesting in Gammaproteobacteria" authored by Desmila Idola, Hiroshi Mori, Yuji Nagata, Lisa Nonaka, and Hirokazu Yano.<br> The directories: "Data", "Results", "Scripts", and "synteny_block_search" are used for psi-blast search and visualization of the results.<br> Synteny block search requires protein database and gff files available from Zenodo repository: <br> Gammaproteobacteria protein dataset: doi 10.5281/zenodo.5880327 Betaproteobacteria protein dataset: <br> doi 10.5281/zenodo.5885688 Alphaproteobacteria protein dataset:<br> doi 10.5281/zenodo.7839301<br> "attS_sequencing" directory contains README.txt which contains all commands used for attS amplicon sequencing. <br> "resequencing" directory contains README.txt and illumina reads assemblies of single gene knockout mutants as well as parent strain BHY606. <br> <br> <br> <br>