Additional file 8 of Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen

Additional file 8: Supplementary Table 1. General statistics of the RNA-seq datasets generated for this study. Supplementary Table 2. TE composition in the B. hordei DH14 genome based on our manually curated transposon database. Supplementary Table 3. Functional annotations of the proteins encoded by the 43 coding genes newly discovered in the B. hordei genome. Supplementary Table 4. TPM expression values for mRNAs and lncRNAs of B. hordei K1AC during infection of H. vulgare cv. ‘Margret’. Supplementary Table 5. Gene ontology (GO) enrichment of B. hordei mRNAs induced at specific time points of infection. Supplementary Table 6. Gene ontology (GO) enrichment of H. vulgare mRNAs induced at specific time points of infection. Supplementary Table 7. Pearson correlation coefficient table for co-regulation of lncRNAs with mRNAs in B. hordei. Supplementary Table 8. Pearson correlation coefficient table for co-regulation of lncRNAs with consensus TEs in B. hordei. Supplementary Table 9. List of oligonucleotides used for PCR amplification and qRT-PCR.