Additional file 4 of Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

Assembly of T. castaneum consensus genome maps with range of parameters. Detailed assembly metrics for assembled consensus genome maps using strict, default and relaxed “-T” parameter, p-value threshold are named Relaxed-T, Default-T and Strict-T respectively. The best “-T” parameter was used for two additional assemblies with either relaxed minimum molecule map length (relaxed-minlen) of 100 kb, rather than the 150 kb default, or a strict minimum molecule map length (strict-minlen) of 180 kb. (CSV 389 kb)