OzWheat V1.0 SNP data assets

Single nucleotide polymorphism genotypes for ~300 varieties from the OzWheat diversity panel generated with alternative platforms combined in a single matrix. Original platform source files are also provided. \n\nTranscript SNPs:\n63,222 SNP loci. 298 wheat lines. \nFile=OzWheat_Transsnp_filtered_CS1.0_231130.hmp.txt\n\n90K Illumina SNP array:\n23362 SNP loci. 286 wheat lines from OzWheat panel 1 and 300 lines from OzWheat panel 2. \nFile=V1_V2_commonSNP_merged.hmp\n\n40K Illumina SNP array:\n10670 SNP loci. 286 wheat lines. \nFile=OW1_40K_filtered.hmp.txt\n\nDARTseq:\n56467 SNP loci. 282 wheat lines. \nFile=Report_DW21-6152_SNP_mapping_2.csv\n\nCombined platform SNP - joins SNPs called from transcriptome data, 90K and 40K array and DARTseq. \n115,260 SNP loci. 296 wheat lines. \nFile=OzWheat_Transsnp40k90kDArT_filtered_CS1.0_alleleinfo_240102.hmp.txt\n\nKeeble-Gagnère G, Pasam R, Forrest KL, et al. Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization. Front Plant Sci. 2021;12:756877. Published 2021 Dec 22. doi:10.3389/fpls.2021.756877\nLineage: Transcript SNPs were generated in strategic investment projects OD-107742, OD-211556, OD-220968\n\nDARTseq SNPs were generated as part of Jess Hyles PhD project and funded by The University of Sydney\n\n40 and 90K data was generated in collaboration with AgVic under the GRDC DAV00127 project, and through OD-105738, OD-107742 and OD-209560.