Geographic isolation versus dispersal: Relictual alpine grasshoppers support a model of interglacial diversification with limited hybridization
收藏Figshare2022-02-02 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Geographic_isolation_versus_dispersal_Relictual_alpine_grasshoppers_support_a_model_of_interglacial_diversification_with_limited_hybridization/16645912/1
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资源简介:
<b>Samples.xlsx</b>: Description of individual and population codes used in the different analyses and genomic datasets.<br><b>Podisma_c85d5m20sh5_10000SNPs.str</b>: Input file (10,000 random SNPs) used to perform genetic clustering analyses (STRUCTURE) including all populations of <i>Podisma pedestris</i>, <i>P. carpetana</i>, and <i>P. cantabricae</i>.<br><b>Pedestris_c85d5m6sh2_10000SNPs.str</b>: Input file (10,000 random SNPs) used to perform genetic clustering analyses (STRUCTURE) for populations of <i>Podisma pedestris</i>.<br><b>Carpetana_c85d5m11sh3_10000SNPs.str</b>: Input file (10,000 random SNPs) used to perform genetic clustering analyses (STRUCTURE) for populations of <i>Podisma carpetana</i>.<br><b>Podisma_c85d5m20sh5_23333SNPs.str</b>: Input file (23,333 SNPs) used to perform principal component analyses (PCA) including all populations of <i>Podisma pedestris</i>, <i>P. carpetana</i>, and <i>P. cantabricae</i>.<br><b>Pedestris_c85d5m6sh2_11999SNPs.str</b>: Input file (11,999 SNPs) used to perform principal component analyses (PCA) for populations of <i>Podisma pedestris</i>.<br><b>Carpetana_c85d5m11sh3_13003SNPs.str</b>: Input file (13,003 SNPs) used to perform principal component analyses (PCA) for populations of <i>Podisma carpetana</i>.<br><b>Podisma_c85d5m20sh5.nex</b>: Input file (NEXUS format) used to perform phylogenomic analyses in SNAPP.<br><b>SVDQUARTETS.zip</b>: This ZIP folder contains the genetic datasets (NEXUS format) used to perform phylogenomic analyses in SVDQUARTETS.<br><b>PHYLONETWORKS.zip</b>: This ZIP folder contains the input files used to perform PHYLONETWORKS analyses.<br><b>TREEMIX.zip</b>: This ZIP folder contains the input files (TREEMIX format) used to perform phylogenomic analyses in TREEMIX.<br><b>DSTATISTICS.zip</b>: This ZIP folder contains the input files (LOCI format) used to perform <i>D</i>-statistic (ABBA/BABA) tests in PYRAD.<br><b>FASTSIMCOAL2.zip</b>: This ZIP folder contains input files for demographic analyses in FASTSIMCOAL2.<br><b>STAIRWAYPLOT.zip</b>: This ZIP folder contains input files for demographic reconstructions in STAIRWAYPLOT.<br><b>OccurrenceData.zip</b>: This ZIP folder contains occurrence data (CSV format) used for environmental niche modelling (ENM).
提供机构:
Ortego, Joaquin; Knowles, L. Lacey
创建时间:
2021-10-09



