Summary of significant genes determined by Bayesian inference z-score using cutoff |z-score| ≥1.96 and |fold-change| ≥1.5 in response to infection with wild type Salmonella Typhimurium or an isogenic ΔsipA, sopABDE2 mutant.

WT loops = wild type inoculated loops; MUT loops = ΔsipA, sopABDE2 mutant inoculated loops; Detailed gene list is provided in Table S4. Total number of changed genes is the unique set of altered genes across all time points and regulation direction. Genes with common regulation are defined by the intersection of the sets of genes found significant for WT and for MUT conditions, whereas the genes that differ are the set of significant genes in WT that are not found in MUT condition.