Single-cell RNA-seq data from Smart-seq2 sequencing of FACS sorted cells (v2)
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Gene-count tables for FACS sorted cells sequenced with Smart-Seq2 from 20 organs of 7 mice. Cells are grouped by tissue of origin.<br><br>Includes data for 53,760 cells, 44,879 of which passed a QC cutoff of at least 500 genes and 50,000 reads.<br>Cell annotations using the Cell Ontology [1] controlled vocabulary are in a separate csv.<br>This differs from v1 by renaming "Brain_Neurons" --> "Brain_Non-microglia" to be consistent with the manuscript.<br><br>Update 2018-09-20: Updated annotations to latest manuscript version<br>Update 2018-02-16: Separated Diaphragm cells from Muscle cells, and Aorta cells from Heart cells.<br>Update 2018-02-20: Aorta and Heart erroneously contained Diaphragm and Muscle data, and have now been corrected.<br>Update 2018-03-09: Renamed tissues for nomenclature standards: "Colon" --> "Large_Intestine" "Muscle" --> "Limb_Muscle" "Mammary" --> "Mammary_Gland" "Brain_Microglia" --> "Brain_Myeloid" "Brain_Non-microglia" --> "Brain_Non-Myeloid"Update 2018-03-22: Renamed subtissues:<br>- tissue: Heart, subtissue: ? --> tissue: Heart, subtissue: Unknown- tissue: Skin, subtissue: NA --> tissue: Skin, subtissue: Telogen<br>Update 2018-03-23: Removed row numbers in first column of metadata_FACS.csv<br>Update 2018-03-27: Added tissue tSNEs and cluster ids<br><br>[1] http://purl.obolibrary.org/obo/cl.owl<br>
