NIH Roadmap Epigenomics Mapping Consortium Data

NIH Roadmap Epigenomics Mapping Consortium Data Data presented here are from the following publication: Kundaje*, Meuleman*, Ernst*, Bilenky* et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317–330 (2015). https://doi.org/10.1038/nature14248 DNA methylation data are available at: roadmap.dnam.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byDataType/dnamethylation/ Chromatin states, core 15-state model (5 marks, 127 epigenomes) are available at: roadmap.chmm.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/ DNase-seq and ChIP-seq peaks are available in several modalities: -consolidated data: roadmap.peaks.consolidated.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byFileType/peaks/consolidated -unconsolidated data: given file size limits, these were separated into broad, gapped and narrow peak format: -broadPeak: roadmap.peaks.unconsolidated.broadPeak.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak -gappedPeak: roadmap.peaks.unconsolidated.gappedPeak.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak -narrowPeak: roadmap.peaks.unconsolidated.narrowPeak.tar.gz These data were downloaded from https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak Addendum: RNA data can be found at https://zenodo.org/uploads/15465494 Consolidated Imputed peaks can be found at https://zenodo.org/uploads/15465558