GSMMs generated for protist_induced_metabolic_cooperation

Figshare2026-01-23 更新2026-04-28 收录

微生物代谢互作

基因组尺度代谢模型

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https://figshare.com/articles/dataset/GSMMs_generated_for_protist_induced_metabolic_cooperation/29109176 数据链接链接失效反馈

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These are GSMMs used in protist-induced bacterial metabolic interactions

创建时间：

2026-01-23

Data_Sheet_1_Transcription Profiling Reveals Cooperative Metabolic Interactions in a Microbial Cheese-Ripening Community Composed of Debaryomyces hansenii, Brevibacterium aurantiacum, and Hafnia alvei.PDF

奶酪微生物组

微生物代谢互作

Ripening cultures containing fungi and bacteria are widely used in smear-ripened cheese production processes, but little is known about the biotic interactions of typical ripening microorganisms at th

NIAID Data Ecosystem100

Goodrich Methanogen Mice

肠道微生物遗传

微生物代谢互作

Host genetics and the gut microbiome can both influence host metabolic phenotypes. However, whether host genetic variation shapes the gut microbiome and interacts with it to affect host phenotype is u

NIAID Data Ecosystem40

Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Olfactory bulb

代谢网络建模

微生物代谢互作

Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Olfactory bulb This model is described in the article: The gut microbiota modulates host amino acid and glutathione meta

NIAID Data Ecosystem30

Additional file 3 of Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha

基因组尺度代谢模型

代谢工程优化

Additional file 3 Genome scale metabolic model details. It contains a list of reactions with only one associated gene-protein-reaction association for which no homolog in O. polymorpha was identified.

Figshare2021-03-15 更新70

Castillo2016 - Whole-genome metabolic model of N.crassa using CoReCo

基因组尺度代谢模型

微生物代谢网络重建

This model was reconstructed with CoReCo method from protein sequence and phylogeny data. CoReCo is described in Pitkanen, E., Jouhten, P., Hou, J., Syed, M. F., Blomberg, P., Kludas, J., Oja, M., Hol

NIAID Data Ecosystem40

GSMMs generated for protist_induced_metabolic_cooperation

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