Additional file 1 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

Additional file 1: Table S1. The list of all segregating SNPs in the core genome of S. pyogenes. Table S2. The list of 46 strains of S. pyogenes used for variant detection. Table S3. SNP clusters identified by SweepCluster from all segregating SNPs of S. pyogenes. Table S4. The list of SNPs from S. pyogenes associated with the disease phenotype acute rheumatic fever (p-value ≤ 0.05). Table S5. SNP clusters identified by SweepCluster from the SNPs associated with the disease phenotype acute rheumatic fever for S. pyogenes.