five

Training f5c/nanopolish models for nanopore R10.4.1 chemistry

收藏
NIAID Data Ecosystem2026-05-01 收录
下载链接:
https://www.ncbi.nlm.nih.gov/sra/ERP149780
下载链接
链接失效反馈
官方服务:
资源简介:
We trained models for R10.4.1 for use with f5c eventalign and call-methylation. Given f5c relies on nanopolish models, we use nanopolish for training such models. We sequenced the human methylated and non-methylated (WGA) DNA datasets from zymo dna methylation standards (D5013). One PromethION flowcell was used for each dataset and we obtained ~7X depth for the non-methylated and ~9X for the methylated. The whole genome amplified non-methylated data with no base modifications is used for training neucleotide model. Both methylated (only CG methylated in this Zymo dataset) and non-methylated are needed for training a methylation model in CpG context. More information is detailed at https://hasindu2008.github.io/f5c/docs/r10train.
创建时间:
2023-10-13
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作