high_CTCF4

NIAID Data Ecosystem2026-03-14 收录

三维基因组学

增强子-启动子互作

数据链接：

https://zenodo.org/record/7566086 数据链接链接失效反馈

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资源简介：

Simulation data for high CTCF condition from the paper "Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development".

创建时间：

2023-02-01

Condensin II Counters Cohesin and RNA Polymerase II in 3D Chromatin Organization

三维基因组学

染色质动力学

CTCF is present at the anchors of thousands of loops likely formed via cohesin-mediated loop extrusion in mammalian cells. Interaction domains present in D. melanogaster chromosomes form via the segre

NIAID Data Ecosystem50

smFISH of genes and enhancers during the LPS response of wild-type and cohesin-deficient macrophages

转录爆发动力学

增强子-启动子互作

Transcription is an intermittent process that occurs in bursts. The frequency and the number of messenger RNA (mRNA) produced by these bursts determine expression levels and shape cell-to-cell variabi

NIAID Data Ecosystem30

marinerData NHA9 Hi-C Files

三维基因组学

生物信息学工具

Hi-C files from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143465 were subsampled and reprocessed to create small test files for R package development.

Zenodo2023-04-11 更新20

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

三维基因组学

染色体结构

GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sampl

NIAID Data Ecosystem50

Supplementary data for the paper "3D modeling of Hi-C contacts: seeing the spatial organization of fungal chromosomes and new opportunities for visual integration of omics data"

三维基因组学

染色体结构

Configuration files (*.yml) used by the 3DGB workflow to produce models of 3D genomes and resulting structures (*.pdb) presented in the paper "3D modeling of Hi-C contacts: seeing the spatial organiza

Zenodo2023-03-16 更新20

high_CTCF4

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