Additional file 11: of De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

Fusion read relative frequency in breast cancer subtypes. Expression for 79 breast cancer specific fusion transcripts as well as those associated wild-type 5â ˛- and 3- reference genes is summarized in the file. Expression is the normalized RNA-Seq read counts as estimated using RSEM and followed by upper quartile normalization. Fusion transcripts were divided into two breast cancer sub-type groups: ER and/or HER2 positive and triple negative. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 39Â kb)