Data files for "Phylogenomics reveals the history of host use in mosquitoes," Soghigian et al. 2023.

Data files for "Phylogenomics reveals the history of host use in mosquitoes," Soghigian et al. 2023. These are raw alignment and R data/analysis files that we presented in our manuscript. For code and other resources, refer to our GitHub repository (https://github.com/jsoghigian/culicitree).Soghigian_etal_NatComm_Culicidae_pcm_R.tar.gz - The scripts, inputs, and outputs for our phylogenetic comparative methods.aa_pruned_75.aa.phy.tar.bz2 - The amino acid alignment used to generate the maximum likelihood topology discussed in the manuscript and used for subsequent analyses.nt_pruned_75.phy.tar.bz2 - The nucleotide alignment discussed in the manuscript. Due to saturation, we focus analyses on codon position two.pres90.aa.noog.phy.tar.bz2 - The alignment used in MCMCTree for divergence time analyses.aa_pruned_75.aa.parts - Partition file for the amino acid alignment.nt*.parts files - Partition files for the nucleotide alignment.