Additional file 2: of Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut

Table S1. Summary of metagenomic sequencing of fecal samples from 12 individuals by PacBio and other sequencers. Table S2. Contigs generated from assembly of PacBio and short reads. Table S3. Distribution of read-depths and contig lengths in PacBio contigs of the three subjects. Table S4. Classification and characterization of 82 circular contigs <1-Mb in PacBio assembly. Table S5. Functional annotation of the 71 plasmid CCs based on COGs. Table S6. Intra-similarity and length of terminal direct repeats (TDRs) of crAssphage linear genomes. Table S7. High-quality chromosome bins reconstructed from PacBio contigs. Table S8. Host prediction by similarity search of the 71 plasmid CCs for the public genome database. Table S9. Summary of host prediction of the 71 plasmid CCs. Table S10. Summary of host prediction of the 11 phage CCs. Table S11. Clusters of plasmids and phages, putative hosts, and the number of reads mapped to the clusters in the IGCJ dataset. Table S12. Estimation of ratio of plasmids and crAssphage per microbial chromosome in the IGCJ dataset. Table S13. COGs having significant difference in abundance between plasmids and reference genomes detected in the IGCJ dataset. Table S14. Resfams-based antibiotic resistance functions in plasmids detected in the IGCJ dataset. (XLSX 221 kb)