遇见数据集

Homologous membrane protein structures (HOMEP) version 1

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Zenodo2020-07-29 更新2026-05-25 收录
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<strong>Table 1</strong> = List of membrane protein structures in the <strong>HOMEP</strong> data set (version 1).<br> From Forrest, Tang &amp; Honig 2006 Biophysical Journal (Supplementary Table 1)<br> https://www.ncbi.nlm.nih.gov/pubmed/16648166 Contains the following columns:<br> PDB-Code Protein-Name Source Res-(Å) Length (Num-TM) Number-of-TM-domains Family <strong>Table 2</strong> = List of pairs of membrane protein structures in the <strong>HOMEP</strong> data set (version 1).<br> From Forrest, Tang &amp; Honig 2006 Biophysical Journal (Supplementary Table 2) Contains the following columns:<br> Model Family Query Template ID(%) RMS(Å) GDT_TS(%) TM-ID(%) TM-RMS(Å) TM GDT_TS(%) <strong>Table 3 </strong>= Manually-defined transmembrane regions in the <strong>HOMEP</strong> data set (version 1), listed for each family by transmembrane segment number. From Forrest, Tang &amp; Honig 2006 Biophysical Journal (Supplementary Table 3). Contains the columns defined as follows:<br> Protein chain identifier, start (-s) and end (-e) residues for each PDB structure in the family

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2019-06-10
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