Supporting material for "Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of2 the pest fruit fly Bactrocera cucurbitae."

<em>Bactrocera cucurbitae</em> is an important agricultural pest. Basic genomic information is lacking for this species, which could be used to inform methods of control, damage mitigation, and eradication efforts of this pest. A comprehensive transcriptome has been sequenced, assembled, and annotated from a mass-rearing sexing strain of this species. This is a foundational resource that can be leveraged to better understand the physiology and biochemistry of this insect as well as utilized in population genetics.<br>
A transcriptome assembly was constructed containing 17,654 transcript isoforms derived from 10,425 unique genes. This transcriptome size is similar to reports from other Tephritid species and likely includes about 70-80% of the protein coding genes in the genome. The sequence data is publically available in INSDC archives at NCBI/EBI/DDBJ and here we present the InterProScan, BLAST and other analysis results used to annotate the transcriptome, all is provided as a resource to Tephritid researcher community.