Supplementary Material for "Comprehensive Analysis of Disease Pathology in Im-munocompetent and Immunocompromised hosts fol-lowing pulmonary SARS-CoV-2 Infection"

<strong>Supplementary Materials: </strong>The following figure/tables are uploaded here: Figure S1: Histopathology of the trachea in SARS-CoV-2 infected hamsters. Figure S2: qPCR analysis of B and T cell lineage markers in LD and CP-LD infected hamster lungs Figure S3: Histopathology of the adrenal gland in SARS-CoV-2 infected hamsters Figure S4: White pulp content in the spleen of SARS-CoV-2 infected hamsters. Figure S5: Acute renal tubular necrosis in SARS-CoV-2 infected hamsters. Figure S6: Top canonical pathways operative in immunocompetent hamster lungs infected with low-dose SARS-CoV-2 at 4 days post-infection Figure S7: Top canonical pathways operative in immunocompetent hamster lungs infected with low-dose SARS-CoV-2 at 16 days post-infection Figure S8: Canonical hypercytokinemia/hyperchemokinemia pathway map Figure S9: Canonical interferon signaling pathway map Figure S10: Top canonical pathways operative in immunocompromised hamster lungs infected with low-dose SARS-CoV-2 at 4 days post-infection Figure S11: Top canonical pathways operative in immunocompromised hamster lungs infected with low-dose SARS-CoV-2 at 16 days post-infection Table S1: Differentially regulated biological functions at 4dpi versus uninfected hamster lungs Table S2: Differentially regulated biological functions at 16dpi versus uninfected hamster lungs Table S3: Differentially regulated biological functions in immunosuppressed SARS-CoV-2 infected hamster lungs at 4dpi Table S4: Differentially regulated biological functions in immunosuppressed SARS-CoV-2 infected hamster lungs at 16dpi Table S5: List of primers used for hamster and SARS-CoV-2 genes in the present study