Datasets for Sudianto et al. (2025) Horizontal Gene Transfers Underpin Ribose Heterotrophy and Central Carbon Metabolism Remodeling in Gloeobacteraceae

README.mdthis file<br>aliThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files with .ali extension<br>alignment-clipkitThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files after clipkit trimming<br>AnnotationThis directory contains an archive (.tar.gz) consisting of the annotation for 343 cyanobacterial genomes used in this study<br>genomeThis directory contains an archive (.tar.gz) consisting of the 343 genomes used in this study<br>HMMsearchThis directory contains an archive (.tar.gz) consisting of the output of profile HMM search in the GTDB R220 representative species search<br>HOG_sequencesThis directory contains an archive (.tar.gz) consisting of the fasta sequences from HOG of interest in our dataset<br>OmpaPa_resultsThis directory contains an archive (.tar.gz) consisting of the selected OmpaPa outputs (.list) and their configuration (.json)<br>pHMMThis directory contains an archive (.tar.gz) consisting of the profile HMMs of the HOG sequences<br>phyThis directory contains an archive (.tar.gz) consisting of the OmpaPa result alignment files with .phy extension<br>scriptThis directory contains the python script used to extract genomic regions of neighboring gene of interest<br>speciestree_fastaThis directory contains the alignment and idm files for species tree in Figure S1<br>speciestree_treThis directory contains the .tre file for species tree in Figure S1<br>treThis directory contains an archive (.tar.gz) consisting of the gene trees derived from OmpaPa result alignments<br>