Transposable element annotation of Colletotrichum destructivum Cd709

Transposable elements (TEs) were annotated on genome assembly of Colletotrichum destructivum Cd709 (accession numbers CP080979-CP080996), using the REPET package ( Amselem et al., 2015 ). Briefly, the TEDENOVO pipeline ( Flutre et al., 201) was used to detect repeated elements in the genome and to provide a consensus sequence for each family. Consensus sequences were then classified using the PASTEC tool ( Hoede et al., 2014), based on the Wicker hierarchical TE classification system ( Wicker et al., 2007). After manual correction, the resulting library of consensus sequences was used to annotate TE copies in the whole genome using the TEANNOT pipeline ( Quesneville et al., 2005). The TE annotation allowed to identification of 49 subfamily elements according to the Wicker classification, covering 6.2% of the genome of Cd709. More information on Colletotrichum destructivum genome CD709 can be retrieved at https://bioinfo.bioger.inrae.fr/ (BioinfoBioger website) Direct link for Cd709 genome on BioinfoBioger website: Cd709