ORFs and annotations of the single-end transcriptome derived from the forward unpaired reads of Savalia savaglia RNAseq data

This dataset contains Open Reading Frames (ORFs) and annotations of the original single-end transcriptome outputs, obtained from the forward broken paired-end RNAseq of the false black coral Savalia savaglia. The dataset includes the following files:

From TransDecoder analyses:

• Assembly_Ss_SE.Trinity.fasta.transdecoder.cds:
Nucleotide sequences for coding regions of the final candidate ORFs.

• Assembly_Ss_SE.Trinity.fasta.transdecoder.gff3:
Positions within the target transcripts of the final selected ORFs.

• Assembly_Ss_SE.Trinity.fasta.transdecoder.pep:
Peptide sequences for the final candidate ORFs, with shorter candidates within longer ORFs removed.

• Assembly_Ss_SE.Trinity.fasta.transdecoder.bed:
BED-formatted file describing ORF positions, suitable for viewing using GenomeView or IGV.

• blastp.outfmt6.w_pct_hit_length:
File providing percentages of hit lengths from BLASTp results, including top hit's length and percent of the length covered in the alignment.

• pfam.domtblout:
PFAM domain annotations for the predicted proteins.

From Trinotate analyses:
• myTrinotate_SE_Ss.tsv:
Comprehensive annotation file with results from Trinotate, including protein domain identification and other annotations.

• Trinotate_SE_Ss_report.cXp_summary.html:
HTML report summarizing the annotation results from Trinotate, providing an overview of the functional annotations and transcript features.