ORFs and annotations of the single-end transcriptome derived from the forward unpaired reads of Savalia savaglia RNAseq data

This dataset contains Open Reading Frames (ORFs) and annotations of the original single-end transcriptome outputs, obtained from the forward broken paired-end RNAseq of the false black coral Savalia savaglia. The dataset includes the following files: From TransDecoder analyses: • Assembly_Ss_SE.Trinity.fasta.transdecoder.cds: Nucleotide sequences for coding regions of the final candidate ORFs. • Assembly_Ss_SE.Trinity.fasta.transdecoder.gff3: Positions within the target transcripts of the final selected ORFs. • Assembly_Ss_SE.Trinity.fasta.transdecoder.pep: Peptide sequences for the final candidate ORFs, with shorter candidates within longer ORFs removed. • Assembly_Ss_SE.Trinity.fasta.transdecoder.bed: BED-formatted file describing ORF positions, suitable for viewing using GenomeView or IGV. • blastp.outfmt6.w_pct_hit_length: File providing percentages of hit lengths from BLASTp results, including top hit's length and percent of the length covered in the alignment. • pfam.domtblout: PFAM domain annotations for the predicted proteins. From Trinotate analyses: • myTrinotate_SE_Ss.tsv: Comprehensive annotation file with results from Trinotate, including protein domain identification and other annotations. • Trinotate_SE_Ss_report.cXp_summary.html: HTML report summarizing the annotation results from Trinotate, providing an overview of the functional annotations and transcript features.