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FlowCode example data for testing debarcoder and analysis pipeline
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2025-11-07
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Benchmarking information of the assembly pipeline.
Table provides a summary of computational resources used for each step in our assembly pipeline (Fig 1A). Columns reflect an identifier for the pipeline step, bioinformatics tool used, the total numbe
Figshare2021-08-03 更新50
Additional file 2: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis
Metadata profiling report generated automatically by the iMAP to provide a summary of the samples and the associated metadata. This report is the initial step in the RAYG (review-as-go) process. The r
Figshare2019-07-03 更新40
Toy dataset for metaGEM documentation (Gut v1)
This dataset was generated to test and benchmark the metaGEM workflow. The 100 bp illumina WGS reads consist of ~10% subsets of 3 paired end sets of reads from the following publication: Karlsson, Fre
Zenodo2021-01-05 更新30
Diadema antillarum purge_dups output files and --dual-scaf assembly files
Note that the filename ragtag.HiFi.polished.simplified.filtered.fa.gz is the same file as the RefSeq assembly file available on NCBI with the assession number GCA_040938485.1. The filenames ragtag.H
Zenodo2026-06-13 更新40
Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for interrogating RNA transcript abundance and diversity. This article provides a detailed introduction to fundamenta
NIAID Data Ecosystem40
