Additional file 8: of In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans

SNPs and InDels between the isolates of the t331 lineage. The mutations were detected with the “Basic Variant Detection” implemented in the CLC Genomics Workbench 8.0.5. SNP stands for single nucletiode polymorphism, MNP for multi nucleotide polymorphism; fs is the abbreviation of frameshift. For MNPs, every changed base is counted as a SNP in Fig. 5. It is also given if a SNP is synonymous or non-synonymous. If the SNP changes the amino acid, the new amino acid is reported. The nomenclature of the sequence variants can be viewed on http://www.hgvs.org/mutnomen/ . (XLSX 30 kb)