Additional file 1 of Genetic architecture of protein expression and its regulation in the mouse brain

Additional file 1: Supplementary Table S1: Proteins identified and quantified by LC/LC-MS/MS. Supplementary Table S2: Differentially expressed (DE) proteins in whole brain between B6 and D2 strains. Supplementary Table S3: Significantly enriched Gene Ontology (GO) terms of DE proteins between C57BL/6 J and DBA/2 J. Supplementary Table S4: Genetic variance and heritability estimates for all 9979 proteins identified. Supplementary Table S5: Variant peptides detected by the proteogenomics analysis. Supplementary Table S6: Peptides showing allele-specific expression.