Extended data for Fig 3, showing the results of the mixed viral analysis with altered parameters for k, s, and unique reads.

The sample (Patient 1–5), query strain (EBV, HIV-1, U21941, FR751039, and TOTAL HPV as sum of U21941 and FR751039), expected single end (SE) number of reads, expected paired end (PE) number of read pairs, k-mer length, step size, boolean value for unique read parameter (UniqRead), FlexTyper Single-End count, FlexTyper Paired-End count, Centrifuge paired-end count, and Kraken2 Paired-end count. (XLSX)