CDS and intron sequence alignments among the Drosophila melanogaster subgroup species

Sequence alignments generated and used by Yamashita et al. (2025). This data can be used as input to the ancestral inference pipeline (available at https://github.com/nigevogen/Ancestral-inference-pipeline-2025). See README for more information about data files. Journal article Yamashita, H., Matsumoto, T., Kawashima, K., Abdulla Daanaa, H. S., Yang, Z., & Akashi, H. (2025). Dinucleotide preferences underlie apparent codon preference reversals in the Drosophila melanogaster lineage. Proceedings of the National Academy of Sciences, 122(21), e2419696122. https://doi.org/10.1073/pnas.2419696122