Relate-estimated coalescence rates and allele ages for European beef cattle

Overview

Coalescence rates and allele ages calculated for five beef cattle breeds (Charolais, Simmental, Limousin, Hereford, Angus) using Relate.

We estimated the joint genealogy of 684 individuals, including both Bos taurus and Bos indicus, then extracted the embedded genealogy for the five cattle breeds and re-estimated the population size history and branch lengths.

We extracted the embedded genealogy for each of the five beef cattle breeds, jointly estimated the population size history, and re-estimated the branch lengths.

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Coalescence Rates and Allele Ages

The *.coal files record coalescence rates for each of the five cattle breeds.

The gzipped files allele_ages_*.gz record allele ages for each of the five cattle breeds.