Processed Metagenomic Data (Assemblies and Bins) Using MetaBolt and MetaWRAP

This repository contains processed metagenomic data derived from three distinct microbiome environments: gut, air, and sewage. Each dataset was analyzed using two genome-resolved metagenomic pipelines: MetaBolt – A computationally efficient, Nextflow-based pipeline employing an optimized set of k-mers for rapid and scalable recovery of metagenome-assembled genomes (MAGs). MetaWRAP – A widely adopted modular pipeline designed for comprehensive metagenomic binning and genome reconstruction. This dataset is intended to support reproducible benchmarking and comparative performance analysis of metagenomic assembly and binning tools. Microbiome Datasets The following publicly available datasets were used: Gut Microbiome – NCBI BioProject: PRJNA400621 Air Microbiome – NCBI BioProject: PRJNA428491 Sewage Microbiome – NCBI BioProject: PRJNA319198 Each microbiome dataset contains 10 representative samples, processed with both MetaBolt and MetaWRAP using identical inputs. Citation If you use this dataset or any part of it in your work, please cite the following resources accordingly: If you use MetaBolt: MetaBolt: A Computationally Efficient Pipeline for the Rapid Recovery of Metagenome-Assembled Genomes. [Journal Name], 2025.Zenodo DOI: https://doi.org/10.5281/zenodo.15243430 If you use MetaWRAP: MetaWRAP – a flexible pipeline for genome-resolved metagenomic data analysis. Microbiome. 2018;6:158.DOI: https://doi.org/10.1186/s40168-018-0541-1