Additional file 1: Table S1. of Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

Characterization of cattle autosomal CNVRs based on previously published studies. Table S2 – Detailed features of 861 autosomal CNVRs identified in this study. Table S3 – Comparison of CNVRs detected in this study with the results from three other CNV studies using the Illumina BovineHD BeadChip Array. Table S4 – Comparison of CNVRs detected in this study with structural variants deposited in the DGVa. Table S5 – Detailed features of Ensembl genes in CNVRs. Table S6 – PANTHER pathway analysis of genes in CNVRs in this study. Table S7 – The corresponding MGI gene to Bovine Ensembl gene in CNVRs. Table S8 – Detailed phenotypic description of mouse orthologous genes for Bovine Ensembl genes in CNVRs. Table S9 – Detailed features of excluded centromeric and telemeric regions in this study. Table S10 – Detailed features of excluded immunoglobulin regions in this study. Table S11 – Primers and probes for CNVR validation. Table S12 – Primers and probes for the basic transcriptional factor 3. (XLSX 686 kb)