Reproducibility package for rsx: a high-performance streaming toolkit for RAD-seq sex determination

Reproducibility package for the revised rsx software paper, recording rsx v0.2.8 and complete CUDA coverage for the per-marker association tests, the Beta-Binomial Bayes factor with its directional posterior, and the sample-PCA Gram matrix. It includes the raw per-repetition A100 and RTX 5070 rows behind every reported device ratio, the scripts that derive the manuscript tables and crossover figure from them, CPU/GPU parity evidence, literature datasets, binding checks, versioned TOML profiles, hydrated configurations, and pre-execution reproducibility archives. The 35.15 GB literature dataset is retained unchanged from the earlier versions. This version supersedes 0.2.8-resubmission.3. A pre-submission audit reconciled the manuscript and the response letter against these measurements, correcting superseded CUDA medians in the response, a mebibyte-to-gibibyte conversion, and several LaTeX export defects; the paper source and rendered submission artifacts here are the corrected ones. The packaging script now takes its date stamp as an argument and archives reproducibly, so the bundle contains exactly the 785 files the payload manifest inventories, with no bytecode caches. Paper source is pinned at commit 82e2606a0515a7c83f659f85ee6f0be3c77834bd (tag submission-v2); the reproducibility tree at 98d52c5d8a75a568ec210844f0acf1f1beff0faf; the software at rsx v0.2.8. RSX_DEPOSIT_README.org describes every component and how to verify it.