Localization densities of models of the Nup84 subcomplex of the Saccharomyces cerevisiae Nuclear Pore Complex. While the original modeling included generation of localization densities, these were n
Coarse-grained molecular dynamics (CGMD) simulation technique (MARTINI force field) is applied to monitor the aggregation of helical peptides representing the transmembrane sequence and its extension
Cells were maintained in complete media (CM) or starved for 24 hours in HBSS prior to imaging. The p:s ratios and representative images are presented for: Nup54-mEGFP494(0).
Forces and torques for the ELBA potentials, dielectric constant of the ELBA water model, error analysis, additional membrane results, sensitivity to timestep size, benchmarks. (PDF)
