Dataset supporting the study: "Genome-wide associations of host susceptibility to helminth and blood pathogens in spatially structured rodent populations"

This repository contains the datasets, a README file describing all variables, and the codes used to generate the results for the study “Genome-wide associations of host susceptibility to helminth and blood pathogens in spatially structured rodent populations.” The repository includes a quality-filtered VCF file, metadata, phenotype files (in .fam format), and covariate and kinship matrices used in analyses performed with GEMMA. 0data_final_filtered.vcf The filtered genotype dataset was generated from 182 individual bank voles sampled across 10 sites. The raw reads are a part of the samples deposited and available through the National Center for Biotechnology Information's Sequence Read Archive under BioProject accession PRJNA1465137. GWAS_voles_parasites_pathogens_metadata.csv The metadata include sampling georeferences in decimal degrees, collection dates (day/month/year), infection status of individual bank voles to the five parasites and five pathogens screened, and each BioSample accession linking both the deposited genetic data and deposited metadata. The sampling was conducted in the years 2016, 2022, and 2023. Except for Mazury, all sites were sampled in August–September 2022 or 2023; Mazury was sampled in September 2016. README.txtThis file provides detailed descriptions of all variables and files included in the datasets.