Supplementary material related to denitrifier completeness - Pold Saghaï Jones Hallin

Supplementary alignments and data for nitrous oxide reductase, and scripts for recreating figures in manuscript.<br>Genome_annotation_commands.txt contains the commands used for annotating genomes with original annotation tools.The hmmalign_nucmap_derep_assign.py script and hmmer_genome_as.sh scripts are used to search nt sequences for proteins using a reference amino acid alignment, and are described in the genome_annotation_commands.txt script.<br>Figure scripts are labeled according to figure in manuscript. With exception for MAG coverage data provided here ("TARA_MAGS_repOnly...."), all data are in supplementary file provided with manuscript. Figure1 script also contains code to generate gRodon figure 2a and supplementary figure 2. Supplementary figure 1 was generated in ITOL and does not have an R script associated with it.<br>The DenitCompletenessRawGenomeAnnotations.zip folder contains original annotations for genomes, labeled according to tool used.<br>bac120_r214_HQ_fuso corresponds to tree used in figure S1 as linked in source data file