Characterization of the HrpL-regulon across Pseudomonas syringae strains.

a, See Materials and Methods.b, The number of known HrpL-regulated genes for PtoDC3000 was determined using data collected by [16], [17], [19], and defined as the number of genes found up-regulated in at least two studies. For Pph1448A the number of known HrpL-regulated genes was determined according to data generated by [18], [19]; and defined as the number of genes found up-regulated in either study. See Table S5 for details.c, Genes expected to be HrpL-regulated were defined as genes being part of an operon known to be HrpL-regulated, genes found HrpL-dependent in other strains, or genes involved in coronatine synthesis. See Table S6 for details.d, Missing genes were defined as “ known HrpL-regulated” not found differentially expressed in our analysis.e, represent the number of genes found upregulated after genes split up between contigs were removed. NA, not applicable. ND, not determined.