Interactome was reverse engineered with ARACNe from a mouse whole brain expression dataset (437 samples, GSE10415). ARACNe was run with 100 bootstrap iterations using all probes that mapped to a set o
Crop disease leads to significant waste worldwide, both pre- and postharvest, with subsequent economic and sustainability consequences. Disease outcome is determined both by the plants’ response to th
Precise control of developmental processes is encoded in the genome in the form of gene regulatory networks (GRNs). Such multi-factorial systems are difficult to decode in vertebrates owing to their c
Based on the NetworkReconstruction_v1.0_2019.sh script and subsequent formation of a matrix for each edge (1 for present and 0 for absent), the file in the below zip file was used for 1.enrichment ana
Due to recent advances in reprogramming cell phenotypes, many efforts have been dedicated to developing reverse engineering procedures for the identification of gene regulatory networks that emulate d