Transcriptome analysis of invasive Gypsophila paniculata (baby's breath) populations from Michigan and Washington, USA.

File: Metadata-699228-processed-ok.tsv. Contains: metadata for the associated BioProject (Accession #PRJNA606240). File: RSEM.isoform.counts.matrix.wAnnot. Contains: Annotated count file for each isoform File: import_VCF_and_get_allele_frequencies_by_population.R Contains: R code to inport the VCF file and cacluate allele frequencies File: intersects.00_09.vcf.gz Contains: File containing SNPs of genes that were found to be differentially expressed across all three tissues File: PARC_20180710_RNA_Normalization_DE_Analysis.Rmd Contains: R markdown file for rRNA identification, data normalization, and DE analysis File: Metadata.txt Contains: metadata file containing sample name, population, and tissue type. File: Gerimation_Obs_Table.csv Contains: Raw data from the germination success portion of the experiment. It includes number of seeds germinated per day for each parent plant over the 14 day experimental period. File: Above_Below_RawData_Formated ContainsRaw data from the above- and below ground tissue allocation and emergence success portion of the experiment. File: Get_SNP_INDEL_Effect.pl Contains: Custom code to identify indel effects in differentially expressed trancripts File: run_getSNPEffect.sh Contains: Custom code to identify SNP effects in differentially expressed trancripts File: GetPositionMap.pl Contains Custom code to identify SNP positions in differentially expressed trancripts