Adaptive evolution targets a piRNA precursor transcription network

File "cuff cDNA sequences.docx" contains cloned cuff cDNA sequences from Drosophila melanogaster and Drosophila simulans used to make transgenes. Files "nG_Cuff_proteomics" and "rhiP_Cuff_proteomics" are scaffold files, which contains mass spectrometry protein spectrum counts for Cuff immuno-precipitates. Cuff proteins are either driven by rhi promoter (rhiP) or UASp promoter under nos-Gal4 driver (nG). These files can be opened by Scaffold Protein Spectra Viewer by Proteome Software.