In this presentation, I explored the Jukes-Cantor model (JC69), a foundational model in molecular evolution that assumes equal mutation rates among all four nucleotides. Under the supervision of Prof.
Report (text format) from the tree reconstruction using the best-fit model (TIM3+F+I+G4) identified by ModelFinder in IQTREE v. 2.2.0. Contains the resulting trees
The reconstruction of the Tree of Life has relied almost entirely on concatenation methods, which do not accommodate gene tree heterogeneity, a property that simulations and theory have identified as
strap (Stratigraphic Tree Analysis for Palaeontology) is a new package for the freely available statistical programming language R designed to perform three main tasks: (1) to time-scale phylogenies o
It has been proposed that supertree approaches should be applied to large multilocus sequence datasets to achieve computational tractability. Large datasets such as those derived from phylogenomics s
