Analysis simulated dataset 3. This simulated dataset models an input with incomplete annotation of chemically modified peptides intensity, required for exact calculation of stoichiometry in the Analys
Tandem mass tag (TMT) mass spectrometry is a mainstream isobaric chemical labeling strategy for profiling proteomes. Here we present a 29-plex TMT method to combine the 11-plex and 18-plex labeling st