Number of aligned pairs for each sample, categorized by alignment type.

“Total Reads Aligned” are the number of pairs that aligned to the reference genome, “Different Contig Pairs” are read pairs in which each read aligned to a different genome, “Same Contig Pairs” are the read pairs that aligned to only one genome, “Poor Match Pairs” are the read pairs that had a poor match quality in the alignment, and “Single Reads” are read pairs where only one read of the pair aligned to any genome.
(XLSX)