Uniprot datasets for training taxonomic classification

The data is based on the UniProt-Swiss-Prot release 2020-04 dataset and contains data derived from amino acid sequences of human, bacterial and viral origin. From each original sequence we created multiple patches of length 100 using a sliding window. The data is stored in the FASTA format according to >{ID}_{patch index}|{class marker} sequence with ID - denotes the ID of the original sequence in the UniProt-Swiss-Prot dataset sequence - patch of length 100 of an amino acid sequence patch_index - denotes the starting index of the given patch within the original sequence class marker - indicates the taxonomic class 0 - virus 1 - bacteria 2 - human / mammal The data is split into test, training and validation set which contain the following number of patches per class: - train: 4.891.278 - test: 611.602 - val: 611.602