Concordance of SNP genotype calls.

Concordance was assessed for 36,904 SNPs called from both Illumina GA sequence data and the Vitis9KSNP array. Concordance is found along the diagonal and the remaining cells represent different categories of non-concordance. The values inside each cell refer the number of SNPs in that category, followed by the percent value in parentheses. The most common type of non-concordance is found in cases where a SNP is called homozygous from the Illumina data but is called heterozygous from the array data.