Data from: ABC inference of multi-population divergence with admixture from unphased population genomic data

Analysis scripts from simulation studyThe contents of this zipped file include i) the cross-validation scripts for assessing the model selection performance (modCV scripts), and ii) the PODS analysis scripts for assessing parameter estimation (POD scripts).analysis-scripts.zipSimulation scripts for reference table generationThis zipped archive file contains the 14 R scripts used to simulate data for the simulation study portion of our manuscript. Each script corresponds to one sampling scheme, but all share the same structure and code. The first few lines of the script (ll. 15-17) set the length of loci in the dataset ('size' scripts vary this by scaling theta), the number of individuals sampled ('ind' scripts vary this), and the number of loci sampled ('block' scripts vary this).simulation-scripts.zipScripts for empirical application to B. pallida dataThe R scripts in this file were used to simulate data for the Biorhiza pallida analysis.Bpal-scripts.zipLines used to simulate models in msABCThis text file gives the basic msABC (Pavlidis et al. 2010) lines used to simulate data under the 7 models considered in our study, using parameter/variable names instead of values in the command line code.ms-lines.txt